Comparison of some homogeneity tests in analysis of over-dispersed binomial data

This paper compares the procedures based on the extended quasi-likelihood, pseudo-likelihood and quasi-likelihood approaches for testing homogeneity of several proportions for over-dispersed binomial data. The type I error of the Wald tests using the model-based and robust variance estimates, the score test, and the extended quasi-likelihood ratio test (deviance reduction test) were examined by simulation. The extended quasi-likelihood method performs less well when mean responses are close to 1 or 0. The model-based Wald test based on the quasi-likelihood performs the best in maintaining the nominal level. The score test performs less well when the intracluster correlations are large or heterogeneous. In summary: (i) both the quasilikelihood and pseudo-likelihood methods appear to be acceptable but care must be taken when overfitting a variance function with small sample sizes; (ii) the extended quasi-likelihood approach is the least favourable method because its nominal level is much too high; and (iii) the robust variance estimator performs poorly, particularly when the sample size is small.     

Dynamics of nitrogen,phosphorus, algal biomass,and suspended solids in an artificial lentic ecosystem and significant implications of regional hydrology on trophic status

Chemical and biological parameters were analyzed to examine how regional hydrological fluctuations influence water quality of a artificial lentic ecosystem over a two-year period The intensity of seasonal monsoon rain accounted for most of annual inflow and discharge and influenced flow pathway (interflow vs. overflow), resulting in a modification of chemical and biological conditions. Sharp contrasting interannual hydrology of intense vs. weak monsoon occurred during the study. The intense monsoon disrupted thermal stratification and resulted in ionic dilution, high TP and high inorganic solids (NVSS) in the headwater reach. The variation of NVSS accounted 75% of TP variation (slope = 4.14, p < 0.01, n = 48). Regression analysis of residual chlorophyll-a (Chl) versus flushing rate indicated that short hydraulic retention time and high mineral turbidity affected algal growth in the headwater reach during summer monsoon. In contrast, severe drought during weak monsoon produced strong thermal stratification, low inorganic solids, high total dissolved solids (TDS), and low TP in the entire system. In addition, Chl concentrations were controlled by phosphorus. Based on the physical, chemical and biological parameters, riverine conditions, dominated during the intense monsoon, but lacustrine conditions were evident during the weak monsoon. The interannual dynamics suggest that monsoon seasonality is considered the main forcing factor regulating overall functions and processes of the waterbody and this characteristic has an important implication to eutrophication of the system.     

Assessment of groundwater contamination using geographic information systems

In this study two sites were selected in order to investigate groundwater contamination and spatial relationships among groundwater quality, topography, geology, landuse and pollution sources. One site is the Asan area, an agricultural district where pollution sources are scattered and which is mainly underlain by granite of Cretaceous age. The other site is the Gurogu area of Seoul city, an industrial district where an industrial complex and residential areas are located and which is mainly underlain by gneiss of Precambrian age. Groundwater samples collected from these districts were analysed for chemical constituents. An attribute value files of chemical constituents of groundwater and the spatial data layers were constructed and pollution properties were investigated to establish out spatial relationships between the groundwater constituents and pollution sources using geographic information systems (GIS).Relatively high contents of Si and HCO₃ ^– in the groundwater from the Asan area reflect the effect of water–rock interaction whereas high contents of Cl^–, NO₃ ^– and Ca²⁺ in the groundwater from the Gurogu area are due to the pollution of various sources. The significant seasonal variation of SiO₂, HCO₂ ^– and Ca²⁺ contents, and that of Ca²⁺ content were observed in the Asan and the Gurogu areas, respectively. Seasonal variation of pollutants such as Cl^–, NO₃ ^– and SO₄ ^2– was not observed in either area. Pollution over the critical level of the Korean drinking water standard has been investigated from 15 sampling sites out of 40 in the Asan area, and 33 sampling sites out of 51 in the Gurogu area. Pollution by NO₃ ^–, Cl^–, Fe²⁺, Mn²⁺, SO₄ ^2– and Zn²⁺ in the groundwater from the industrial district (Gurogu area) and that of NO₃ , SO₄ ^2– and Zn²⁺ in the groundwater from the agricultural district (Asan area) were observed. The principal pollutant in both areas is NO₃ ^–. Deep groundwater from the Asan area is not yet contaminated with NO₃ ^– except for one site, but most of the shallow groundwater site occurring near the potential point sources is seriously contaminated. From the result of buffering analysis, it seems clear that factories and stock farms are the principal pollution sources in the Asan area. The groundwater from the Gurogu area has already been seriously polluted considering the fact of NO₃ ^– contamination of deep groundwater. Chlorine pollution of shallow groundwater in the Gurogu area was also observed. Spatial relationship between pollution level and its source was clarified in this study by using GIS, which will be applicable to the effective management of groundwater quality.     

Effects of in-situ ozonation on indigenous microorganisms in diesel contaminated soil: survival and regrowth

Soil column experiments were conducted to investigate the effects of chemical oxidation on the survival of indigenous microbes (i.e., heterotrophic microbes, phenanthrene-degrading microbes, and alkane-degrading microbes) for field soil contaminated with diesel fuel. Rapid decreases of total petroleum hydrocarbons (TPH) and aromatics of diesel fuel were observed within the first 60 min of ozone injection; after 60 min, TPH and aromatics decreased asymptotically with ozonation time. The three types of indigenous microbes treated were very sensitive to ozone in the soil column experiment, hence the microbial population decreased exponentially with ozonation time. The numbers of heterotrophic, alkane-degrading, and phenanthrene-degrading bacteria were reduced from 10(8) to 10(4), 10(7) to 10(3), and 10(6) CFU g soil(-1) to below detection limit after 900 min of ozonation, respectively. Except for the soil sample ozonated for 900 min, incubation of ozone-treated soil samples that were not limited by oxygen diffusion showed further removal of TPH. The soil samples that were ozonated for 180 min exhibited the lowest concentration of TPH and the highest regrowth rate of the heterotrophic and alkane-degrading populations after the 9 weeks of incubation.     

Use of autotrophic sulfur-oxidizers to remove nitrate from bank filtrate in a permeable reactive barrier system

This study was conducted to evaluate the potential applicability of an in situ biological reactive barrier system to treat nitrate-contaminated bank filtrate. The reactive barrier consisted of sulfur granules as an electron donor and autotrophic sulfur-oxidizing bacteria as a biological component. Limestone was also used to provide alkalinity. The results showed that the autotrophic sulfur oxidizers were successfully colonized on the surfaces of the sulfur particles and removed nitrate from synthetic bank filtrate. The sulfur-oxidizing activity continuously increased with time and then was maintained or slightly decreased after five days of column operation. Maximum nitrate removal efficiency and sulfur oxidation rate were observed at near neutral pH. Over 90% of the initial nitrate dissolved in synthetic bank filtrate was removed in all columns tested with some nitrite accumulation. However, nitrite accumulation was observed mainly during the initial operation period, and the concentration markedly diminished with time. The nitrite concentration in effluent was less than 2 mg-N/l after 12 days of column operation. When influent nitrate concentrations were 30, 40, and 60 mg-N/l and sulfur content in column was 75%, half-order autotrophic denitrification reaction rate constants were 31.73 x 10(-3), 33.3 x 10(-3), and 36.4 x 10(-3) mg(1/2)/l(1/2)min, respectively. Our data on the nitrate distribution profile along the column suggest that an appropriate wall thickness of a reactive barrier for autotrophic denitrification may be 30 cm when influent nitrate concentration is less than 60 mg-N/l.     

Increased 3HV Concentration in the Bacterial Production of 3-Hydroxybutyrate (3HB) and 3-Hydroxyvalerate (3HV) Copolymer with Acid-Digested Rice Straw Waste

Bacterial synthesis of 3-hydroxybutyrate (3HB) and 3-hydroxyvalerate (3HV) copolymer [P(3HB-co-3HV)] using the hydrolysate of rice straw waste as a carbon source was affected by the composition of the hydrolysate, which depends highly on the rice straw pretreatment condition. Acid digestion with 2 % sulfuric acid generated larger production of P(3HB-co-3HV) than 6 % sulfuric acid, but 3HV concentration in the copolymer produced with 2 % acid hydrolysate was only 8.8 % compared to 18.1 % with 6 % acid hydrolysate. To obtain a higher 3HV mole fraction for enhanced flexibility of the copolymer, an additional heating was conducted with the 2 % acid hydrolysate after removal of residual rice straw. As the additional heating time increased a higher concentration of levulinic acid was generated, and consequently, the mole fraction of 3HV in P(3HB-co-3HV) increased. Among the conditions tested (i.e., 20-, 40-, 60-min), 60-min additional heating following 2 % sulfuric acid digestion achieved the highest 3HV mole fraction of 22.9 %. However, a longer heating time decreased the P(3HB-co-3HV) productivity, probably due to the increased intermediates concentrations acting as inhibitors in the hydrolysates. Therefore, the use of additional heating needs to consider both the increase in the 3HV mole fraction and the decrease in the P(3HB-co-3HV) productivity.     

Effect of acute whole-body proton irradiation on hematological and intestinal variables in mice

Female C57BL/6 mice were exposed to a single dose of protons or ⁶⁰Co gamma rays at 20 mGy and 2 Gy, which represent the recommended limit for annual occupational exposure and the daily fractional dose for patients undergoing radiotherapy, respectively. A control group was not exposed to radiation. The number of peripheral blood, bone marrow, and spleen cells was assessed 24 h after radiation to investigate the marrow suppression. The number of lymphocytes and neutrophils in peripheral blood was significantly lower in mice exposed to the higher dose of radiation than in the nonirradiated mice. However, at a low dose of radiation, there were no discernable hematological effects. The frequency of micronuclei in bone marrow cells was increased only after the high dose of gamma radiation. Radiation-induced intestinal apoptosis was measured using terminal deoxynucleotide transferase labeling assay. The magnitude of damage was greater after gamma irradiation than after proton irradiation at the same dose. Among the systemic biological end point to predict whole body radiation effect, the apoptosis of intestinal crypts may be the most sensitive parameter to provide information even at low dose of radiation.     

Citizen participation in disaster recovery projects and programmes in rural communities: a comparison of the Haiti earthquake and Hurricane Katrina

This study investigates predictors of local participation in recovery projects and programmes following Hurricane Katrina in the United States in 2005 and the earthquake in Haiti in 2010. Using two sets of survey data, it examines whether disaster impacts and social capital (social trust and civic engagement) are associated with disaster recovery participation and compares predictors of such engagement in the two locations. Multivariate logistic regression results reveal that physical injuries, limited community mobility, and government trust increase recovery participation in Haiti (n=278), whereas emotional distress and homeownership decrease it. On the Gulf Coast of the US (n=259), physical injuries and higher civic engagement augment recovery participation, while homeownership and age reduce it. The confounding factors of national contexts and post‐disaster time frames might explain the differences in the results. The discussion addresses the relation between country‐specific vulnerability and recovery participation and suggests implications for policy and practice to improve local citizens’ capabilities to participate in sustainable recovery processes.     

Bioreduction of nitrate in groundwater using a pilot-scale hydrogen-based membrane biofilm reactor

A long-term pilot-scale H₂-based membrane biofilm reactor (MBfR) was tested for removal of nitrate from actual groundwater. A key feature of this second-generation pilot MBfR is that it employed lower cost polyester hollow fibers and still achieved high loading rate. The steady-state maximum nitrate surface loading at which the effluent nitrate and nitrite concentrations were below the Maximum Contaminant Level (MCL) was at least 5.9 g·N·(m²·d)^?1, which corresponds to a maximum volumetric loading of at least 7.7 kg·N·(m³·d) ^?1. The steady-state maximum nitrate surface area loading was higher than the highest nitrate surface loading reported in the first-generation MBfRs using composite fibers (2.6 g·N·(m²·d)^?1). This work also evaluated the H₂-utilization efficiency in MBfR. The measured H₂ supply rate was only slightly higher than the stoichiometric H₂-utilization rate. Thus, H₂ utilization was controlled by diffusion and was close to 100% efficiency, as long as biofilm accumulated on the polyester-fiber surface and the fibers had no leaks.     

A New Flood Index for Use in Evaluation of Local Flood Severity: A Case Study of Small Ungauged Catchments in Korea1

Ahn, Jae Hyun and Hyun Il Choi, 2013. A New Flood Index for Use in Evaluation of Local Flood Severity: A Case Study of Small Ungauged Catchments in Korea. Journal of the American Water Resources Association (JAWRA) 49(1): 1‐14. DOI: 10.1111/jawr.12025 Abstract: The aim of this article is to develop a new index measuring the severity of floods in small ungauged catchments for initial local flood information by the regression analysis between the new flooding index and rainfall patterns. Although a rapid local flood caused by heavy storm in a short period of time is now one of common natural disasters worldwide, such a sudden and violent hydrologic event is difficult to forecast. As local flooding rises rapidly with little or no advance warning, the key to local flood forecasting is to quickly identify when and where local flooding above a threshold is likely to occur. The new flooding index to characterize local floods is measured by the three normalized relative severity factors for the flood magnitude ratio, the rising curve gradient, and the flooding duration time, quantifying characteristics of flood runoff hydrographs. The new flooding index implemented for the two selected small ungauged catchments in the Korean Peninsula shows a very high correlation with logarithm of the 2‐h maximum rainfall depth. This study proposes 30 mm of rainfall in a 2‐h period as a basin‐specific guidance of precaution for the incipient local flooding in the two study catchments. It is expected that the best‐fit regression equation between the new flooding index and a certain rainfall rate can provide preliminary observations, the flood threshold, and severity information, for use in a local flood alert system in small ungauged catchments. Editor's note: This paper is part of a featured series on Korean Hydrology. The series addresses the need for a new paradigm of river and watershed management for Korea due to climate and land use changes.